For detailed description of the SPAR output and examples on how to use SPAR please check the tutorials (PDFs) below and the FAQ section.
Preparing files for SPAR
Tutorial: How to generate bigWig files and BAM for SPAR analysis
Scripts for preparing files with detailed instructions can be downloaded from SPAR repository.
How to analyze your own data?
How to analyze ENCODE or DASHR datasets?
How to download analysis results in a single file?
How to monitor progress for the submitted job?
How to assess data/results quality?
How to view, sort, filter, and download small RNA loci using Interactive peak browser?
How to view SPAR results in the Genome browser?
How to view analysis results as plots?
How to download results by RNA class?
How to download full results?